Skip to main navigation Skip to search Skip to main content

Crystal structure, Hirshfeld surface analysis, intermolecular interaction energies, energy frameworks and DFT calculations of 4-amino-1-(prop-2-yn-1-yl)pyrimidin-2(1H)-one

  • Mouad Lahyaoui
  • , Amal Haoudi
  • , Badr Eddine Kartah
  • , Ahmed Mazzah
  • , Tuncer Hökelek
  • , Joel T. Mague
  • , Youssef Kandri Rodi
  • , Nada Kheira Sebbar
  • Sidi Mohamed Ben Abdellah University
  • Mohammed V University in Rabat
  • Science and Technology of Lille USR 3290
  • Tulane University
  • Ibn Zohr University

Research output: Contribution to journalArticlepeer-review

11 Citations (Scopus)

Abstract

In the title molecule, C7H7N3O, the pyrimidine ring is essentially planar, with the propynyl group rotated out of this plane by 15.31 (4). In the crystal, a tri-periodic network is formed by N—H· · ·O, N—H· · ·N and C—H· · ·O hydrogen-bonding and slipped π–π stacking interactions, leading to narrow channels extending parallel to the c axis. Hirshfeld surface analysis of the crystal structure reveals that the most important contributions for the crystal packing are from H· · ·H (36.2%), H· · ·C/C· · ·H (20.9%), H· · ·O/O· · ·H (17.8%) and H· · ·N/ N· · ·H (12.2%) interactions, showing that hydrogen-bonding and van der Waals interactions are the dominant interactions in the crystal packing. Evaluation of the electrostatic, dispersion and total energy frameworks indicates that the stabilization is dominated by the electrostatic energy contributions. The molecular structure optimized by density functional theory (DFT) calculations at the B3LYP/6–311 G(d,p) level is compared with the experimentally determined structure in the solid state. The HOMO–LUMO behaviour was also elucidated to determine the energy gap.

Original languageEnglish
Pages (from-to)1183-1189
Number of pages7
JournalActa Crystallographica Section E: Crystallographic Communications
Volume79
Issue numberPt 12
DOIs
Publication statusPublished - 21 Nov 2023

Keywords

  • amino group
  • crystal structure
  • heterocyclic compound
  • hydrogen bonding

Fingerprint

Dive into the research topics of 'Crystal structure, Hirshfeld surface analysis, intermolecular interaction energies, energy frameworks and DFT calculations of 4-amino-1-(prop-2-yn-1-yl)pyrimidin-2(1H)-one'. Together they form a unique fingerprint.

Cite this