TY - GEN
T1 - A constrained, force-directed layout algorithm for biological pathways
AU - Genc, Burkay
AU - Dogrusoz, Ugur
N1 - Publisher Copyright:
© Springer-Verlag Berlin Heidelberg 2004.
PY - 2004
Y1 - 2004
N2 - We present a new elegant algorithm for layout of biological signaling pathways. It uses a force-directed layout scheme, taking into account directional and regional constraints enforced by different molecular interaction types and subcellular locations in a cell. The algorithm has been successfully implemented as part of a pathway integration and analysis toolkit named Patika, and results with respect to computational complexity and quality of the layout have been found satisfactory.
AB - We present a new elegant algorithm for layout of biological signaling pathways. It uses a force-directed layout scheme, taking into account directional and regional constraints enforced by different molecular interaction types and subcellular locations in a cell. The algorithm has been successfully implemented as part of a pathway integration and analysis toolkit named Patika, and results with respect to computational complexity and quality of the layout have been found satisfactory.
UR - https://www.scopus.com/pages/publications/84905389375
UR - https://www.webofscience.com/api/gateway?GWVersion=2&SrcApp=performanshacettepe&SrcAuth=WosAPI&KeyUT=WOS:000189417300029&DestLinkType=FullRecord&DestApp=WOS_CPL
U2 - 10.1007/978-3-540-24595-7_29
DO - 10.1007/978-3-540-24595-7_29
M3 - Conference contribution
AN - SCOPUS:84905389375
SN - 3540208313
SN - 9783540208310
T3 - Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)
SP - 314
EP - 319
BT - Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)
A2 - Liotta, Giuseppe
PB - Springer Verlag
T2 - 11th International Symposium on Graph Drawing, GD 2003
Y2 - 21 September 2003 through 24 September 2003
ER -