Projects per year
Personal profile
Education/Academic qualification
PhD, Automatic identification of evolutionary and sequence relationships in large scale protein data using computational and graph-theoretical analyses, İZMİR YÜKSEK TEKNOLOJİ ENSTİTÜSÜ
2008 → 2013
Master, The effects of hydrogen peroxide, gallic acid and resveratrol on growth and catalase production of Aspergillus fumigatus, ORTA DOĞU TEKNİK ÜNİVERSİTESİ
2005 → 2008
Bachelor, ORTA DOĞU TEKNİK ÜNİVERSİTESİ
2000 → 2005
External positions
Anabilim Dalı Başkanı, Hacettepe University
2021 → …
Expertise related to UN Sustainable Development Goals
In 2015, UN member states agreed to 17 global Sustainable Development Goals (SDGs) to end poverty, protect the planet and ensure prosperity for all. This person’s work contributes towards the following SDG(s):
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SDG 3 Good Health and Well-being
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Collaborations and top research areas from the last five years
Recent external collaboration on country/territory level. Dive into details by clicking on the dots or
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Çizge Karşıtlığı Temelli Temsil Öğrenmesi Ile Yüksek Hassasiyetli Protein Fonksiyon Tahmini
Doğan, T. (PI)
15/06/25 → …
Project: Research › TUBITAK
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Üretken Derin Öğrenme ile Yeni Protein Dizilerinin Moleküler İşlev Odaklı Otomatik Tasarımı
Doğan, T. (PI)
15/12/22 → …
Project: Research › TUBITAK
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Az Biyoaktif Bileşik Verisi Olan Proteinlere Karşı Sanal Tarama Için Derin Öğrenme Modelleri (Azderin)
Doğan, T. (CoI)
1/10/21 → 1/01/25
Project: Research › TUBITAK
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Çekişmeli Çizge Üretici Derin Sinir Ağları ile Hastalık Hedefli Yeni İlaç Adayı Moleküllerin De Novo Tasarımı
Doğan, T. (PI)
15/04/21 → 15/01/25
Project: Research › TUBITAK
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Biyomoleküler ve Biyomedikal Veri İçerisindeki Kompleks ve Heterojen İlişkilerin Bütünleyici Temsili ve Derin Çizge Öğrenme Bazlı Tahmini
Doğan, T. (PI)
1/02/21 → 21/11/24
Project: Research › TUBITAK
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DTA-GNN: a toolkit for constructing target-specific drug–target affinity datasets and training graph neural networks
Özsari, G., Rifaioğlu, A. S., Acar, A. C., Doğan, T. & Atalay, M. V., Jun 2026, In: SoftwareX. 34, 102671.Research output: Contribution to journal › Article › peer-review
Open Access -
Molecular contrastive learning with graph attention network (MoCL-GAT) for enhanced molecular representation
Dalkıran, A., Rifaioglu, A. S., Cetin-Atalay, R., Acar, A. C., Doğan, T. & Atalay, M. V., Dec 2026, In: BMC Bioinformatics. 27, 1, 106.Research output: Contribution to journal › Article › peer-review
Open Access -
OmniPath: Integrated knowledgebase for multi-omics analysis
Türei, D., Schaul, J., Palacio-Escat, N., Bohár, B., Bai, Y., Ceccarelli, F., Çevrim, E., Daley, M., Darcan, M., Dimitrov, D., Doǧan, T., Domingo-Fernández, D., Dugourd, A., Gábor, A., Gul, L., Hall, B. A., Hoyt, C. T., Ivanova, O., Klein, M. & Lawrence, T. & 12 others, , 6 Jan 2026, In: Nucleic Acids Research. 54, D1, p. D652-D660 9 p.Research output: Contribution to journal › Article › peer-review
Open Access9 Citations (Scopus) -
SELFormerMM: multimodal molecular representation learning via SELFIES, structure, text, and knowledge graph integration
Ulusoy, E., Bostancı, Ş., Deniz, B. E. & Doğan, T., 1 Aug 2026, In: Bioinformatics. 42, 2Research output: Contribution to journal › Article › peer-review
Open Access -
A Benchmarking Platform for Assessing Protein Language Models on Function-Related Prediction Tasks
Çevrim, E., Yiğit, M. G., Ulusoy, E., Yılmaz, A. & Doğan, T., 2025, Methods in Molecular Biology. Humana Press Inc., Vol. 2947. p. 241-268 28 p. (Methods in Molecular Biology; vol. 2947).Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review
1 Citation (Scopus)